[
{"function": "optimizerSetting", "nThreads": 20, "lambdaL2": 1e-6,
        "pseudocount": 200 },
{"function": "lbfgsSettings", "maxIters": 1000 },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.0.RBFOX2-1nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.1.RBFOX2-4nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.2.RBFOX2-14nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.3.RBFOX2-40nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.4.RBFOX2-121nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.5.RBFOX2-365nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.6.RBFOX2-1100nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.7.RBFOX2-3300nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addTable", "leftFlank":"GGGGAGTTCTACAGTCCGACGATC", "rightFlank":"TGGAATTCTCGGGTGTCAAGG", 
    "variableRegionLength":40, "nColumns":2, "modeledColumns":[0,1],
	"countTableFile":"countTable.8.RBFOX2-9800nM.tsv.gz", "inputFileType":"tsv.gz" },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 1   },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 4   },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 14  },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 40  },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 121 },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 365 },
{"function": "addSELEX", "bindingSaturation": true, "concentration": 1100},
{"function": "addSELEX", "bindingSaturation": true, "concentration": 3300},
{"function": "addSELEX", "bindingSaturation": true, "concentration": 9800},
{"function": "addNS" },
{"function": "addBindingMode", "size": 10, "flankLength": 6, "singleStrand": true,
        "dinucleotideDistance": 10 },
{"function": "bindingModeConstraints", "index": 1, "roundSpecificActivity": false,
        "experimentSpecificActivity": false },
{"function": "bindingModeSeed", "index": 1, "mononucleotideString": "..TGCATG.."},
{"function": "output", "outputPath": "", "baseName": "fit", "verbose": true }
]